• Bellwood, D. R., Renema, W. & Rosen, B. R. in Biotic Evolution and Environmental Change in Southeast Asia Vol. 82 (eds Gower, D. J. et al.) 216–245 (Cambridge Univ. Press, 2012).

  • Tittensor, D. P. et al. Global patterns and predictors of marine biodiversity across taxa. Nature 466, 1098–1101 (2010).

    Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar
     

  • Yasuhara, M. et al. Hotspots of Cenozoic tropical marine biodiversity. Oceanogr. Mar. Biol. Annu. Rev. 60, 243–300 (2022).


    Google Scholar
     

  • Ezard, T. H., Aze, T., Pearson, P. N. & Purvis, A. Interplay between changing climate and species’ ecology drives macroevolutionary dynamics. Science 332, 349–351 (2011).

    Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar
     

  • Lowery, C. M., Bown, P. R., Fraass, A. J. & Hull, P. M. Ecological response of plankton to environmental change: thresholds for extinction. Annu. Rev. Earth Planet. Sci. 48, 403–429 (2020).

    Article 
    ADS 
    CAS 

    Google Scholar
     

  • Renema, W. in Biogeography, Time, and Place: Distributions, Barriers, and Islands (ed. Renema, W.) 179–215 (Springer, 2007).

  • Johnson, K. G., Renema, W., Rosen, B. R. & Santodomingo, N. Old data for old questions: what can the historical collections really tell us about the Neogene origins of reef-coral diversity in the Coral Triangle? Palaios 30, 94–108 (2015).

    Article 
    ADS 

    Google Scholar
     

  • Di Martino, E., Jackson, J. B., Taylor, P. D. & Johnson, K. G. Differences in extinction rates drove modern biogeographic patterns of tropical marine biodiversity. Sci. Adv. 4, eaaq1508 (2018).

    Article 
    ADS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Renema, W. et al. Hopping hotspots: global shifts in marine biodiversity. Science 321, 654–657 (2008).

    Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar
     

  • Hoeksema, B. W. in Biogeography, Time, and Place: Distributions, Barriers, and Islands (ed. Renema, W.) 117–178 (Springer, 2007).

  • Bellwood, D. R., Goatley, C. H. & Bellwood, O. The evolution of fishes and corals on reefs: form, function and interdependence. Biol. Rev. 92, 878–901 (2017).

    Article 
    PubMed 

    Google Scholar
     

  • Cowman, P. F. & Bellwood, D. R. The historical biogeography of coral reef fishes: global patterns of origination and dispersal. J. Biogeogr. 40, 209–224 (2013).

    Article 

    Google Scholar
     

  • Yasuhara, M. et al. Cenozoic dynamics of shallow‐marine biodiversity in the Western Pacific. J. Biogeogr. 44, 567–578 (2017).

    Article 

    Google Scholar
     

  • Mihaljević, M., Korpanty, C., Renema, W., Welsh, K. & Pandolfi, J. M. Identifying patterns and drivers of coral diversity in the Central Indo-Pacific marine biodiversity hotspot. Paleobiology 43, 343–364 (2017).

    Article 

    Google Scholar
     

  • Harzhauser, M., Mandic, O., Piller, W. E., Reuter, M. & Kroh, A. Tracing back the origin of the Indo‐Pacific mollusc fauna: basal Tridacninae from the Oligocene and Miocene of the sultanate of Oman. Palaeontology 51, 199–213 (2008).

    Article 

    Google Scholar
     

  • Yasuhara, M., Tittensor, D. P., Hillebrand, H. & Worm, B. Combining marine macroecology and palaeoecology in understanding biodiversity: microfossils as a model. Biol. Rev. 92, 199–215 (2017).

    Article 
    PubMed 

    Google Scholar
     

  • Chiu, W. T. R. et al. Marine latitudinal diversity gradients, niche conservatism and out of the tropics and Arctic: climatic sensitivity of small organisms. J. Biogeogr. 47, 817–828 (2020).

    Article 

    Google Scholar
     

  • Jöst, A. B. et al. North Atlantic Gateway: test bed of deep‐sea macroecological patterns. J. Biogeogr. 46, 2056–2066 (2019).

    Article 

    Google Scholar
     

  • Hong, Y. et al. Benthic ostracod diversity and biogeography in an urbanized seascape. Mar. Micropaleontol. 174, 102067 (2022).

    Article 
    ADS 

    Google Scholar
     

  • Leray, M. & Knowlton, N. DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity. Proc. Natl Acad. Sci. USA 112, 2076–2081 (2015).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Hall, R. Southeast Asia’s changing palaeogeography. Blumea 54, 148–161 (2009).

    Article 

    Google Scholar
     

  • Sanciangco, J. C., Carpenter, K. E., Etnoyer, P. J. & Moretzsohn, F. Habitat availability and heterogeneity and the Indo-Pacific warm pool as predictors of marine species richness in the tropical Indo-Pacific. PLoS ONE 8, e56245 (2013).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • O’Dea, A. et al. Environmental change preceded Caribbean extinction by 2 million years. Proc. Natl Acad. Sci. USA 104, 5501–5506 (2007).

    Article 
    ADS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Morlon, H. Phylogenetic approaches for studying diversification. Ecol. Lett. 17, 508–525 (2014).

    Article 
    PubMed 

    Google Scholar
     

  • Cornell, H. V. Is regional species diversity bounded or unbounded? Biol. Rev. 88, 140–165 (2013).

    Article 
    PubMed 

    Google Scholar
     

  • Rabosky, D. L. Diversity-dependence, ecological speciation, and the role of competition in macroevolution. Annu. Rev. Ecol. Evol. Syst. 44, 481–502 (2013).

    Article 

    Google Scholar
     

  • Kisel, Y., McInnes, L., Toomey, N. H. & Orme, C. D. L. How diversification rates and diversity limits combine to create large-scale species–area relationships. Philos. Trans. R. Soc. B 366, 2514–2525 (2011).

    Article 

    Google Scholar
     

  • Losos, J. B. & Schluter, D. Analysis of an evolutionary species–area relationship. Nature 408, 847–850 (2000).

    Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar
     

  • Hall, R., Cottam, M. A. & Wilson, M. E. The SE Asian Gateway: History and Tectonics of the Australia-Asia Collision 1–6 (Geological Society, London, 2011).

  • Wood, S., Paris, C., Ridgwell, A. & Hendy, E. Modelling dispersal and connectivity of broadcast spawning corals at the global scale. Global Ecol. Biogeogr. 23, 1–11 (2014).

    Article 

    Google Scholar
     

  • Bowen, B. W., Rocha, L. A., Toonen, R. J. & Karl, S. A. The origins of tropical marine biodiversity. Trends Ecol. Evol. 28, 359–366 (2013).

    Article 
    PubMed 

    Google Scholar
     

  • Norris, R. D. Pelagic species diversity, biogeography, and evolution. Paleobiology 26, 236–258 (2000).

    Article 

    Google Scholar
     

  • Rocha, L. A., Robertson, D. R., Roman, J. & Bowen, B. W. Ecological speciation in tropical reef fishes. Philos. Trans. R. Soc. B 272, 573–579 (2005).


    Google Scholar
     

  • Cronin, T. M. & Schmidt, N. Evolution and biogeography of Orionina in the Atlantic, Pacific and Caribbean: evolution and speciation in Ostracoda II. Dev. Palaeontol. Stratigr. 11, 927–938 (1988).

    Article 

    Google Scholar
     

  • Neubauer, T. A. et al. Drivers of diversification in freshwater gastropods vary over deep time. Philos. Trans. R. Soc. B 289, 20212057 (2022).


    Google Scholar
     

  • Tennant, J. P., Mannion, P. D. & Upchurch, P. Sea level regulated tetrapod diversity dynamics through the Jurassic/Cretaceous interval. Nat. Commun. 7, 12737 (2016).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Ludt, W. B. & Rocha, L. A. Shifting seas: the impacts of Pleistocene sea‐level fluctuations on the evolution of tropical marine taxa. J. Biogeogr. 42, 25–38 (2015).

    Article 

    Google Scholar
     

  • Kuhnt, W., Holbourn, A., Hall, R., Zuvela, M. & Käse, R. in Continent-Ocean Interactions within East Asian Marginal Seas Vol. 149 (eds Clift, P. et al.) 299–320 (American Geophysical Union, 2004).

  • Westerhold, T. et al. An astronomically dated record of Earth’s climate and its predictability over the last 66 million years. Science 369, 1383–1387 (2020).

    Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar
     

  • Steinthorsdottir, M. et al. The Miocene: the future of the past. Paleoceanogr. Paleoclimatol. 36, e2020PA004037 (2021).

    Article 

    Google Scholar
     

  • Mathes, G. H., van Dijk, J., Kiessling, W. & Steinbauer, M. J. Extinction risk controlled by interaction of long-term and short-term climate change. Nat. Ecol. Evol. 5, 304–310 (2021).

    Article 
    PubMed 

    Google Scholar
     

  • De Blasio, F. V., Liow, L. H., Schweder, T. & De Blasio, B. F. A model for global diversity in response to temperature change over geological time scales, with reference to planktic organisms. J. Theor. Biol. 365, 445–456 (2015).

    Article 
    ADS 
    MathSciNet 
    PubMed 

    Google Scholar
     

  • Yasuhara, M. et al. Past and future decline of tropical pelagic biodiversity. Proc. Natl Acad. Sci. USA 117, 12891–12896 (2020).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Penn, J. L. & Deutsch, C. Avoiding ocean mass extinction from climate warming. Science 376, 524–526 (2022).

    Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar
     

  • Costello, M. J. et al. The universal evolutionary and ecological significance of 20 °C. Front. Biogeogr. 15, e61673 (2023).

    Article 

    Google Scholar
     

  • Kiessling, W., Simpson, C., Beck, B., Mewis, H. & Pandolfi, J. M. Equatorial decline of reef corals during the last Pleistocene interglacial. Proc. Natl Acad. Sci. USA 109, 21378–21383 (2012).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Sun, Y. et al. Lethally hot temperatures during the Early Triassic greenhouse. Science 338, 366–370 (2012).

    Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar
     

  • Hou, Z. & Li, S. Tethyan changes shaped aquatic diversification. Biol. Rev. 93, 874–896 (2018).

    Article 
    PubMed 

    Google Scholar
     

  • Bellwood, D., Hughes, T., Connolly, S. & Tanner, J. Environmental and geometric constraints on Indo‐Pacific coral reef biodiversity. Ecol. Lett. 8, 643–651 (2005).

    Article 

    Google Scholar
     

  • Tada, R., Zheng, H. & Clift, P. D. Evolution and variability of the Asian monsoon and its potential linkage with uplift of the Himalaya and Tibetan Plateau. Prog. Earth Planet. Sci. 3, 4 (2016).

    Article 
    ADS 

    Google Scholar
     

  • Gallagher, S. J. et al. Neogene history of the West Pacific warm pool, Kuroshio and Leeuwin currents. Paleoceanography 24, PA1206 (2009).

  • Yamaguchi, T. & Kamiya, T. Eocene ostracodes from Hahajima Island of the Ogasawara (Bonin) Islands, northwestern Pacific, and their paleobiogeographic significance in the West Pacific. J. Paleontol. 83, 219–237 (2009).

    Article 
    ADS 

    Google Scholar
     

  • Yasuhara, M. et al. Eocene shallow-marine ostracods from Madagascar: southern end of the Tethys? J. Syst. Paleontol. 17, 705–757 (2019).

    Article 

    Google Scholar
     

  • Benson, R. et al. Treatise on Invertebrate Paleontology: Arthropoda 3: Crustacea, Ostracoda. (Geological Society of America, 1961).

  • van Morkhoven, F. P. C. M. Post-Palaeozoic Ostracoda: Their Morphology, Taxonomy and Economic Use: Vol. I: General (Elsevier, 1962).

  • Kingma, J. T. Contributions to the Knowledge of the Young-Caenozoic Ostracoda from the Malayan Region (Univ. Utrecht, 1948).

  • O’Neill, B. C. et al. IPCC reasons for concern regarding climate change risks. Nat. Clim. Change 7, 28–37 (2017).

    Article 
    ADS 

    Google Scholar
     

  • McCauley, D. J. et al. Marine defaunation: animal loss in the global ocean. Science 347, 1255641 (2015).

    Article 
    PubMed 

    Google Scholar
     

  • Finnegan, S. et al. Paleontological baselines for evaluating extinction risk in the modern oceans. Science 348, 567–570 (2015).

    Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar
     

  • Speijer, R., Pälike, H., Hollis, C., Hooker, J. & Ogg, J. in Geologic Time Scale 2020 (eds Gradstein, F. M. et al.) 1087–1140 (Elsevier, 2020).

  • Raffi, I. et al. in Geologic Time Scale 2020 (eds Gradstein, F. M. et al.) 1141–1215 (Elsevier, 2020).

  • Aurelio, M. & Peña, R. Geology of the Philippines 2nd edn (Mines and Geosciences Bureau, 2010).

  • Shin, C. P. et al. Neogene marine ostracod diversity and faunal composition in Java, Indonesia: Indo-Australian Archipelago biodiversity hotspot and the Pliocene diversity jump. J. Crustac. Biol. 39, 244–252 (2019).

    Article 

    Google Scholar
     

  • Silvestro, D., Salamin, N. & Schnitzler, J. PyRate: a new program to estimate speciation and extinction rates from incomplete fossil data. Methods Ecol. Evol. 5, 1126–1131 (2014).

    Article 

    Google Scholar
     

  • Silvestro, D., Salamin, N., Antonelli, A. & Meyer, X. Improved estimation of macroevolutionary rates from fossil data using a Bayesian framework. Paleobiology 45, 546–570 (2019).

    Article 

    Google Scholar
     

  • Condamine, F. L., Guinot, G., Benton, M. J. & Currie, P. J. Dinosaur biodiversity declined well before the asteroid impact, influenced by ecological and environmental pressures. Nat. Commun. 12, 3833 (2021).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Silvestro, D., Antonelli, A., Salamin, N. & Quental, T. B. The role of clade competition in the diversification of North American canids. Proc. Natl Acad. Sci. USA 112, 8684–8689 (2015).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Rambaut, A., Drummond, A. J., Xie, D., Baele, G. & Suchard, M. A. Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Syst. Biol. 67, 901–904 (2018).

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Mayhew, P. J., Bell, M. A., Benton, T. G. & McGowan, A. J. Biodiversity tracks temperature over time. Proc. Natl Acad. Sci. USA 109, 15141–15145 (2012).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Zaffos, A., Finnegan, S. & Peters, S. E. Plate tectonic regulation of global marine animal diversity. Proc. Natl Acad. Sci. USA 114, 5653–5658 (2017).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Boschman, L. M. & Condamine, F. L. Mountain radiations are not only rapid and recent: ancient diversification of South American frog and lizard families related to Paleogene Andean orogeny and Cenozoic climate variations. Glob. Planet. Change 208, 103704 (2022).

    Article 

    Google Scholar
     

  • Miller, K. G. et al. Cenozoic sea-level and cryospheric evolution from deep-sea geochemical and continental margin records. Sci. Adv. 6, eaaz1346 (2020).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Kocsis, Á. T. & Scotese, C. R. Mapping paleocoastlines and continental flooding during the Phanerozoic. Earth Sci. Rev. 213, 103463 (2021).

    Article 

    Google Scholar
     

  • O’Sullivan, D. & Unwin, D. Geographic Information Analysis (Wiley, 2003).

  • Lehtonen, S. et al. Environmentally driven extinction and opportunistic origination explain fern diversification patterns. Sci. Rep. 7, 4831 (2017).

    Article 
    ADS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Condamine, F. L., Romieu, J. & Guinot, G. Climate cooling and clade competition likely drove the decline of lamniform sharks. Proc. Natl Acad. Sci. USA 116, 20584–20590 (2019).

    Article 
    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Scotese, C. R., Song, H., Mills, B. J. & van der Meer, D. G. Phanerozoic paleotemperatures: the earth’s changing climate during the last 540 million years. Earth Sci. Rev. 215, 103503 (2021).

    Article 
    CAS 

    Google Scholar
     

  • Guernet, C., Bourdillon, C. & Roger, J. Palaeogene ostracods of Dohofar (Oman) stratigraphical and paleogeographical implication. Rev. Micropaleontol. 34, 297–311 (1991).


    Google Scholar
     

  • Yasuhara, M. et al. Early Miocene marine ostracodes from southwestern India: implications for their biogeography and the closure of the Tethyan Seaway. J. Paleontol. 94, 1–36 (2020).

    Article 

    Google Scholar
     

  • Tanaka, G. et al. First discovery of Eocene coastal-estuarine ostracods from Japan, with the geological history of the migration of estuarine genera in the Far East. Geol. Mag. 155, 1742–1760 (2018).

    Article 
    ADS 
    CAS 

    Google Scholar
     

  • Whatley, R. & Quanhong, Z. Recent ostracoda of the Malacca Straits. Part. II. (Continuation). Revista Esp. Micropaleontol. 20, 5–37 (1988).


    Google Scholar
     

  • Keij, A. Review of the Indo-westpacific Neogene to Holocene ostracode genus Atjehella. Proc. Kon. Ned. Akad. Wetensch. 82, 449–464 (1979).


    Google Scholar
     

  • Condamine, F., Tian, S. Y. & Yasuhara, M. Cenozoic history of the tropical marine biodiversity hotspot. figshare https://doi.org/10.6084/m9.figshare.25395871.v2 (2024).



  • Source link