Hunt, T. L. & Lipo, C. P. The Statues That Walked: Unraveling the Mystery of Easter Island (Free Press, 2011).
Diamond, J. M. Collapse: How Societies Choose to Fail or Succeed (Penguin, 2006).
Bahn, P. G. & Flenley, J. Easter Island, Earth Island (Thames and Hudson, 1992).
DiNapoli, R. J., Lipo, C. P. & Hunt, T. L. Revisiting warfare, monument destruction, and the ‘Huri Moai’ phase in Rapa Nui (Easter Island) culture history. J. Pac. Archaeol. 12, 1–24 (2020).
Moreno-Mayar, J. V. et al. Genome-wide ancestry patterns in Rapanui suggest pre-European admixture with native Americans. Curr. Biol. 24, 2518–2525 (2014).
Fehren-Schmitz, L. et al. Genetic ancestry of Rapanui before and after European contact. Curr. Biol. 27, 3209–3215 (2017).
Ioannidis, A. G. et al. Native American gene flow into Polynesia predating Easter Island settlement. Nature 583, 572–577 (2020).
Hurles, M. E., Matisoo-Smith, E., Gray, R. D. & Penny, D. Untangling Oceanic settlement: the edge of the knowable. Trends Ecol. Evol. 18, 531–540 (2003).
Kirch, P. V. Peopling of the Pacific: a holistic anthropological perspective. Annu. Rev. Anthropol. 39, 131–148 (2010).
Hunt, T. L. & Lipo, C. P. Late colonization of Easter Island. Science 311, 1603–1606 (2006).
Ralston, T. in Onward and Upward! Papers in Honor of Clement W. Meighan (eds Meighan, C. W. & Johnson, K. L.) 279–306 (Stansbury, 2005).
Métraux, A. Ethnology of Easter Island (Bishop Museum Press, 1971).
Maude, H. E. Slavers in Paradise: the Peruvian Slave Trade in Polynesia, 1862-1864 (Stanford Univ. Press, 1981).
Puleston, C. O. et al. Rain, sun, soil, and sweat: a consideration of population limits on Rapa Nui (Easter Island) before European contact. Front. Ecol. Evol. 5, 69 (2017).
DiNapoli, R. J., Rieth, T. M., Lipo, C. P. & Hunt, T. L. A model-based approach to the tempo of “collapse”: the case of Rapa Nui (Easter Island). J. Archaeolog. Sci. 116, 105094 (2020).
Boersema, J. J. The Survival of Easter Island: Dwindling Resources and Cultural Resilience (Cambridge Univ. Press, 2015).
DiNapoli, R. J., Crema, E. R., Lipo, C. P., Rieth, T. M. & Hunt, T. L. Approximate Bayesian computation of radiocarbon and paleoenvironmental record shows population resilience on Rapa Nui (Easter Island). Nat. Commun. 12, 3939 (2021).
Mieth, A., Kühlem, A., Vogt, B. & Bork, H.-R. in The Prehistory of Rapa Nui (Easter Island) Vol. 22 (eds Rull, V. & Stevenson, C.) 483–520 (Springer, 2022).
Ballard, C., Brown, P., Bourke, R. M. & Harwood, T., eds. The Sweet Potato in Oceania: A Reappraisal (University of Sydney, 2005).
Hather, J. & Kirch, P. V. Prehistoric sweet potato (Ipomoea batatas) from Mangaia Island, Central Polynesia. Antiquity 65, 887–893 (1991).
Storey, A. A. et al. Radiocarbon and DNA evidence for a pre-Columbian introduction of Polynesian chickens to Chile. Proc. Natl Acad. Sci. USA 104, 10335–10339 (2007).
Storey, A. A. et al. Pre-Columbian chickens, dates, isotopes, and mtDNA. Proc. Natl Acad. Sci. USA 105, E99 (2008).
Jones, T. L., Storey, A. A., Matisoo-Smith, E. A. & Ramírez Aliaga, J. M., eds. Polynesians in America: Pre-Columbian Contacts with the New World (AltaMira, 2011).
Gongora, J. et al. Reply to Storey et al.: More DNA and dating studies needed for ancient El Arenal-1 chickens. Proc. Natl Acad. Sci. USA 105, E100 (2008).
Gongora, J. et al. Indo-European and Asian origins for Chilean and Pacific chickens revealed by mtDNA. Proc. Natl Acad. Sci. USA 105, 10308–10313 (2008).
Hagelberg, E., Quevedo, S., Turbon, D. & Clegg, J. B. DNA from ancient Easter Islanders. Nature 369, 25–26 (1994).
Sirak, K. A. et al. A minimally-invasive method for sampling human petrous bones from the cranial base for ancient DNA analysis. BioTechniques 62, 283–289 (2017).
Jarman, C. L. et al. Diet of the prehistoric population of Rapa Nui (Easter Island, Chile) shows environmental adaptation and resilience. Am. J. Phys. Anthropol. 164, 343–361 (2017).
Bronk Ramsey, C. Bayesian analysis of radiocarbon dates. Radiocarbon 51, 337–360 (2009).
Arneborg, J. et al. Change of diet of the Greenland Vikings determined from stable carbon isotope analysis and 14C dating of their bones. Radiocarbon 41, 157–168 (1999).
Rubinacci, S., Ribeiro, D. M., Hofmeister, R. J. & Delaneau, O. Efficient phasing and imputation of low-coverage sequencing data using large reference panels. Nat. Genet. 53, 120–126 (2021).
Malaspinas, A.-S. et al. Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil. Curr. Biol. 24, R1035–R1037 (2014).
Wollstein, A. et al. Demographic history of Oceania inferred from genome-wide data. Curr. Biol. 20, 1983–1992 (2010).
Xing, J. et al. Toward a more uniform sampling of human genetic diversity: a survey of worldwide populations by high-density genotyping. Genomics 96, 199–210 (2010).
Thorsby, E. The Polynesian gene pool: an early contribution by Amerindians to Easter Island. Philos. Trans. R. Soc. B 367, 812–819 (2012).
Malaspinas, A.-S. et al. bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS). Bioinformatics 30, 2962–2964 (2014).
Patterson, N. et al. Ancient admixture in human history. Genetics 192, 1065–1093 (2012).
Moreno-Mayar, J. V. FrAnTK: a Frequency-based Analysis ToolKit for efficient exploration of allele sharing patterns in present-day and ancient genomic datasets. G3 Genes Genomes Genet. https://doi.org/10.1093/g3journal/jkab357 (2021).
Ioannidis, A. G. et al. Paths and timings of the peopling of Polynesia inferred from genomic networks. Nature 597, 522–526 (2021).
Browning, B. L. & Browning, S. R. Detecting identity by descent and estimating genotype error rates in sequence data. Am. J. Hum. Genet. 93, 840–851 (2013).
Ringbauer, H. et al. Accurate detection of identity-by-descent segments in human ancient DNA. Nat. Genet. 56, 143–151 (2024).
Monroy Kuhn, J. M., Jakobsson, M. & Günther, T. Estimating genetic kin relationships in prehistoric populations. PLoS ONE 13, e0195491 (2018).
Hanghøj, K., Moltke, I., Andersen, P. A., Manica, A. & Korneliussen, T. S. Fast and accurate relatedness estimation from high-throughput sequencing data in the presence of inbreeding. GigaScience 8, giz034 (2019).
Mallick, S. et al. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature https://doi.org/10.1038/nature18964 (2016).
Malaspinas, A.-S. et al. A genomic history of Aboriginal Australia. Nature https://doi.org/10.1038/nature18299 (2016).
Ringbauer, H., Novembre, J. & Steinrücken, M. Parental relatedness through time revealed by runs of homozygosity in ancient DNA. Nat. Commun. 12, 5425 (2021).
Purcell, S. et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 81, 559–575 (2007).
Felzke, L. F. & Moore, D. Terminologias de parentesco dos grupos da família linguística Mondé. Bol. Mus. Para. Emílio Goeldi Ciênc. Hum. 14, 15–32 (2019).
Iqbal, Z. & Van Bokhoven, H. Identifying genes responsible for intellectual disability in consanguineous families. Hum. Hered. 77, 150–160 (2014).
González-Martín, A., García-Moro, C., Hernández, M. & Moral, P. Inbreeding and surnames: a projection into Easter Island’s past. Am. J. Phys. Anthropol. 129, 435–445 (2006).
Fournier, R., Tsangalidou, Z., Reich, D. & Palamara, P. F. Haplotype-based inference of recent effective population size in modern and ancient DNA samples. Nat. Commun. 14, 7945 (2023).
Felsenstein, J. Inbreeding and variance effective numbers in populations with overlapping generations. Genetics 68, 581–597 (1971).
Browning, S. R. & Browning, B. L. Accurate non-parametric estimation of recent effective population size from segments of identity by descent. Am. J. Hum. Genet. 97, 404–418 (2015).
Kelleher, J., Etheridge, A. M. & McVean, G. Efficient coalescent simulation and genealogical analysis for large sample sizes. PLoS Comput. Biol. 12, e1004842 (2016).
Alexander, D. H., Novembre, J. & Lange, K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19, 1655–1664 (2009).
Maples, B. K., Gravel, S., Kenny, E. E. & Bustamante, C. D. RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference. Am. J. Hum. Genet. 93, 278–288 (2013).
Reich, D. et al. Reconstructing Native American population history. Nature 488, 370–374 (2012).
Moreno-Mayar, J. V. et al. Early human dispersals within the Americas. Science 362, eaav2621 (2018).
Loh, P.-R. et al. Inferring admixture histories of human populations using linkage disequilibrium. Genetics 193, 1233–1254 (2013).
Chintalapati, M., Patterson, N. & Moorjani, P. The spatiotemporal patterns of major human admixture events during the European Holocene. eLife 11, e77625 (2022).
Gravel, S. Population genetics models of local ancestry. Genetics 191, 607–619 (2012).
Pinart, A. Exploration de l’île de Pâques. Bull. Soc. Géogr. VIe Sér. 16, 193–213 (1878).
Métraux, A. Introduction à La Connaissance de l’Île de Pâques: Résultats de l’Expédition Franco-Belge de Louis-Charles Watelin en 1934 (MNHN, 1935).
Laroche, M.-C. Alfred Métraux à l’île de Pâques, de juillet 1934 à janvier 1935. J. Soc. Océan. 91, 175–182 (1990).
Hunt, T. L. Rethinking Easter Island’s ecological catastrophe. J. Archaeolog. Sci. 34, 485–502 (2007).
Hunt, T. L. & Lipo, C. P. Ecological catastrophe and collapse: the myth of ‘ecocide’ on Rapa Nui (Easter Island). Preprint at SSRN https://doi.org/10.2139/ssrn.2042672 (2012).
McAnany, P. A. & Yoffee, N., eds. Questioning Collapse: Human Resilience, Ecological Vulnerability, and the Aftermath of Empire (Cambridge Univ. Press, 2010).
Athens, J. S. Rattus exulans and the catastrophic disappearance of Hawai’i’s native lowland forest. Biol. Invasions 11, 1489–1501 (2009).
Stortenbeker, C. in Commissie Lange Termijn Milieubeleid (CLTM), Het Milieu: Denkbeelden voor de 21ste Eeuw 309–334 (Kerckebosch, 1990).
Métraux, A. Easter Island: A Stone-Age Civilization of the Pacific, translated by Bullock, M. (Book Club Associates, 1957).
Ramírez Aliaga, J. M. in Mar de Chile (ed. Aldunate del Solar, C.) 84–101 (Museo Chileno de Arte Precolombino, 2014).
Jones, T. L. & Storey, A. A. in Polynesians in America: Pre-Columbian Contacts with the New World (ed. Jones, T. L.) 25–36 (AltaMira, 2011).
Allentoft, M. E. et al. Population genomics of Bronze Age Eurasia. Nature 522, 167–172 (2015).
Damgaard, P. B. et al. Improving access to endogenous DNA in ancient bones and teeth. Sci. Rep. 5, 11184 (2015).
Rohland, N. & Hofreiter, M. Ancient DNA extraction from bones and teeth. Nat. Protoc. 2, 1756–1762 (2007).
Meyer, M. & Kircher, M. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harbor Protoc. https://doi.org/10.1101/pdb.prot5448 (2010).
Kapp, J. D., Green, R. E. & Shapiro, B. A fast and efficient single-stranded genomic library preparation method optimized for ancient DNA. J. Hered. 112, 241–249 (2021).
Briggs, A. W. et al. Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA. Nucleic Acids Res. 38, e87–e87 (2010).
Lindgreen, S. AdapterRemoval: easy cleaning of next generation sequencing reads. BMC Res. Notes 5, 337 (2012).
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754–1760 (2009).
Schubert, M. et al. Improving ancient DNA read mapping against modern reference genomes. BMC Genomics 13, 178 (2012).
DePristo, M. A. et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 43, 491–498 (2011).
Korneliussen, T. S., Albrechtsen, A. & Nielsen, R. ANGSD: Analysis of Next Generation Sequencing Data. BMC Bioinf. 15, 356 (2014).
Fu, Q. et al. A revised timescale for human evolution based on ancient mitochondrial genomes. Curr. Biol. 23, 553–559 (2013).
Green, R. E. et al. A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell 134, 416–426 (2008).
Moreno-Mayar, J. V. et al. A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data. Bioinformatics https://doi.org/10.1093/bioinformatics/btz660 (2019).
The International HapMap 3 Consortium. Integrating common and rare genetic variation in diverse human populations. Nature 467, 52–58 (2010).
Weissensteiner, H. et al. HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing. Nucleic Acids Res. 44, W58–W63 (2016).
Martiniano, R., De Sanctis, B., Hallast, P. & Durbin, R. Placing ancient DNA sequences into reference phylogenies. Mol. Biol. Evol. 39, msac017 (2022).
Raghavan, M. et al. Genomic evidence for the Pleistocene and recent population history of Native Americans. Science 349, aab3884 (2015).
Moreno-Mayar, J. V. et al. Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans. Nature 553, 203–207 (2018).
de la Fuente, C. et al. Genomic insights into the origin and diversification of late maritime hunter-gatherers from the Chilean Patagonia. Proc. Natl Acad. Sci. USA 115, E4006–E4012 (2018).
Posth, C. et al. Reconstructing the deep population history of Central and South America. Cell https://doi.org/10.1016/j.cell.2018.10.027 (2018).
Nakatsuka, N. et al. A paleogenomic reconstruction of the deep population history of the Andes. Cell 181, 1131–1145 (2020).
Nakatsuka, N. et al. Ancient genomes in South Patagonia reveal population movements associated with technological shifts and geography. Nat. Commun. 11, 3868 (2020).
Rasmussen, M. et al. The genome of a Late Pleistocene human from a Clovis burial site in western Montana. Nature 506, 225–229 (2014).
Rasmussen, M. et al. The ancestry and affiliations of Kennewick Man. Nature https://doi.org/10.1038/nature14625 (2015).
Scheib, C. L. et al. Ancient human parallel lineages within North America contributed to a coastal expansion. Science 360, 1024–1027 (2018).
Sousa Da Mota, B. et al. Imputation of ancient human genomes. Nat. Commun. 14, 3660 (2023).
Auton, A. et al. A global reference for human genetic variation. Nature 526, 68–74 (2015).
Taliun, D. et al. Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program. Nature 590, 290–299 (2021).
Wickham, H. ggplot2: Elegant Graphics for Data Analysis (Springer, 2016).
Gretzinger, J. et al. The Anglo-Saxon migration and the formation of the early English gene pool. Nature 610, 112–119 (2022).
Cassidy, L. M. et al. Neolithic and Bronze Age migration to Ireland and establishment of the insular Atlantic genome. Proc. Natl Acad. Sci. USA 113, 368–373 (2016).
Fournier, R., Tsangalidou, Z., Reich, D. & Palamara, P. F. Haplotype-based inference of recent effective population size in modern and ancient DNA samples. Nat. Commun. 14, 7945 (2023).
Delaneau, O., Zagury, J.-F. & Marchini, J. Improved whole-chromosome phasing for disease and population genetic studies. Nat. Methods 10, 5–6 (2012).
Raghavan, M. et al. The genetic prehistory of the New World Arctic. Science 345, 1255832 (2014).
Meyer, M. et al. A high-coverage genome sequence from an archaic Denisovan individual. Science 338, 222–226 (2012).
Prüfer, K. et al. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature 505, 43–49 (2013).